This is a default analysis, i.e. only the variables were added, no other options were selected.
MTB > PCA 'LUNGES'-'BOUT'.
Principal Component Analysis: LUNGES, BITES, ZIGZAGS, NEST, SPINES, DNEST, BOUT
Eigenanalysis of the Correlation Matrix Eigenvalue 2.2881 1.4542 0.9791 0.8861 0.7532 0.4048 0.2344 Proportion 0.327 0.208 0.140 0.127 0.108 0.058 0.033 Cumulative 0.327 0.535 0.674 0.801 0.909 0.967 1.000
Two components have eigen values > 1. Applying this strict rule (only keep components with an eigen value > 1) would mean than only 53.5% of the variability would be retained in two components. The thrid component has an eigen value close to 1 (0.98). Retaining three components would mean that 67.4% of the variation was retained. There is also a problem with the loadings for the components (see below).
Variable PC1 PC2 PC3 PC4 PC5 PC6 PC7 LUNGES 0.470 -0.310 -0.482 -0.076 0.181 0.055 0.639 BITES 0.459 -0.507 -0.130 0.050 0.084 0.080 -0.706 ZIGZAGS -0.248 -0.379 0.244 -0.783 0.022 0.346 0.053 NEST -0.435 -0.400 -0.327 -0.095 -0.114 -0.721 -0.037 SPINES 0.164 -0.465 0.622 0.324 -0.412 -0.116 0.287 DNEST -0.422 -0.224 -0.399 0.361 -0.391 0.574 0.005 BOUT 0.335 0.275 -0.197 -0.367 -0.790 -0.089 -0.073
None of the loadings of the seven variables on the three main components are small or large, most are in the range 0.3 - 0.6 and hence they do little to explain the data structure. Looking at the loadings for PC1-PC3 is not easy to say which variables are particularly associated with each component.
There is an argument that the analysis should consider foru components. The fourth PC has an eigen value of 0.89, and retaiing it would mean that 80% of the variation could be retained in 4 dimensions. Therefore, the PCA was repeated but with an option to extract only 4 components.
MTB > PCA 'LUNGES'-'BOUT'; SUBC> NComponents 4. Eigenanalysis of the Correlation Matrix Eigenvalue 2.2881 1.4542 0.9791 0.8861 0.7532 0.4048 0.2344 Proportion 0.327 0.208 0.140 0.127 0.108 0.058 0.033 Cumulative 0.327 0.535 0.674 0.801 0.909 0.967 1.000 Variable PC1 PC2 PC3 PC4 LUNGES 0.470 -0.310 -0.482 -0.076 BITES 0.459 -0.507 -0.130 0.050 ZIGZAGS -0.248 -0.379 0.244 -0.783 NEST -0.435 -0.400 -0.327 -0.095 SPINES 0.164 -0.465 0.622 0.324 DNEST -0.422 -0.224 -0.399 0.361 BOUT 0.335 0.275 -0.197 -0.367
In fact these are the same loadings as the first analysis. Therefore there is little structure. Only the least important component, PC4, has any obvious variable loading patterns. Therefore, the analysis has demonstrated that we can reduce the dimensionality, from seven tofour, but with little insight into the structure of the data. However, this may be because the current axis orientation is sub-optimal for interpretative purposes. We will investigate this in the next analyses when we use factor analysis with rotation.